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Nucleic Acids Researchжурнал

Редколлегия

• Разин Сергей Владимирович, с 1 января 2014

Статьи, опубликованные в журнале

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  • 2025 Convergent pairs of highly transcribed genes restrict chromatin looping in <i>Dictyostelium discoideum</i>
  • Zhegalova Irina V., Ulianov Sergey V., Galitsyna Aleksandra A., Pletenev Ilya A., Tsoy Olga V., Luzhin Artem V., Vasiluev Petr A., Bulavko Egor S., Ivankov Dmitry N., Gavrilov Alexey A., Khrameeva Ekaterina E., Gelfand Mikhail S., Razin Sergey V.
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom), том 53, № 2 DOI
• • 2025 GENA-LM: a family of open-source foundational DNA language models for long sequences
  • Fishman Veniamin, Kuratov Yuri, Shmelev Aleksei, Petrov Maxim, Penzar Dmitry, Shepelin Denis, Chekanov Nikolay, Kardymon Olga, Burtsev Mikhail
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom), том 53, № 2 DOI
• • 2025 Unveiling the unusual i-motif-derived architecture of a DNA aptamer exhibiting high affinity for influenza A virus
  • Tsvetkov Vladimir, Mir Bartomeu, Alieva Rugiya, Arutyunyan Alexander, Oleynikov Ilya, Novikov Roman, Boravleva Elizaveta, Kamzeeva Polina, Zatsepin Timofei, Aralov Andrey, González Carlos, Zavyalova Elena
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom), том 53, № 1 DOI
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  • 2024 ARTEMIS: a method for topology-independent superposition of RNA 3D structures and structure-based sequence alignment
  • Bohdan Davyd R., Bujnicki Janusz M., Baulin Eugene F.
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom), том 52, № 18, с. 10850-10861 DOI
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  • 2024 Blastocrithidia nonstop mitochondrial genome and its expression are remarkably insulated from nuclear codon reassignment
  • Afonin Dmitry A., Gerasimov Evgeny S., Škodová-Sveráková Ingrid, Záhonová Kristína, Gahura Ondřej, Albanaz Amanda T.S., Myšková Eva, Bykova Anastassia, Paris Zdeněk, Lukeš Julius, Opperdoes Fred R., Horváth Anton, Zimmer Sara L., Yurchenko Vyacheslav
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom) DOI
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  • 2024 Conserved structures and dynamics in 5′-proximal regions of Betacoronavirus RNA genomes
  • de Moura Tales Rocha, Purta Elżbieta, Bernat Agata, Martín-Cuevas Eva M., Kurkowska Małgorzata, Baulin Eugene F., Mukherjee Sunandan, Nowak Jakub, Biela Artur P., Rawski Michał, Glatt Sebastian, Moreno-Herrero Fernando, Bujnicki Janusz M.
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom), том 52, № 6, с. 3419-3432 DOI
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  • 2024 Extensive long-range polycomb interactions and weak compartmentalization are hallmarks of human neuronal 3D genome
  • Pletenev Ilya A., Bazarevich Maria, Zagirova Diana R., Kononkova Anna D., Cherkasov Alexander V., Efimova Olga I., Tiukacheva Eugenia A., Morozov Kirill V., Ulianov Kirill A., Komkov Dmitriy, Tvorogova Anna V., Golimbet Vera E., Kondratyev Nikolay V., Razin Sergey V., Khaitovich Philipp, Ulianov Sergey V., Khrameeva Ekaterina E.
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom), с. 1-19 DOI
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  • 2024 Functional identification of <i>cis</i>-regulatory long noncoding RNAs at controlled false discovery rates
  • Dhaka Bhavya, Zimmerli Marc, Hanhart Daniel, Moser Mario B., Guillen-Ramirez Hugo, Mishra Sanat, Esposito Roberta, Polidori Taisia, Widmer Maro, García-Pérez Raquel, Julio Marianna Kruithof-de, Pervouchine Dmitri, Melé Marta, Chouvardas Panagiotis, Johnson Rory
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom), том 52, № 6, с. 2821-2835 DOI
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  • 2024 HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors
  • Vorontsov Ilya E., Eliseeva Irina A., Zinkevich Arsenii, Nikonov Mikhail, Abramov Sergey, Boytsov Alexandr, Kamenets Vasily, Kasianova Alexandra, Kolmykov Semyon, Yevshin Ivan S., Favorov Alexander, Medvedeva Yulia A., Jolma Arttu, Kolpakov Fedor, Makeev Vsevolod J., Kulakovskiy Ivan V.
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom), том 52, № D1, с. D154-D163 DOI
• • 2024 Open Genes—a new comprehensive database of human genes associated with aging and longevity
  • Rafikova Ekaterina, Nemirovich-Danchenko Nikolay, Ogmen Anna, Parfenenkova Anna, Velikanova Anastasiia, Tikhonov Stanislav, Peshkin Leonid, Rafikov Konstantin, Spiridonova Olga, Belova Yulia, Glinin Timofey, Egorova Anastasia, Batin Mikhail
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom), том 52, № D1, с. D950-D962 DOI
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  • 2023 A comprehensive survey of long-range tertiary interactions and motifs in non-coding RNA structures
  • Bohdan Davyd R., Voronina Valeria V., Bujnicki Janusz M., Baulin Eugene F.
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom), том 51, № 16, с. 8367-8382 DOI
• • 2023 Annotation of uORFs in the OMIM genes allows to reveal pathogenic variants in 5'UTRs
  • Filatova Alexandra, Reveguk Ivan, Piatkova Maria, Bessonova Daria, Kuziakova Olga, Demakova Victoria, Romanishin Alexander, Fishman Veniamin, Imanmalik Yerzhan, Chekanov Nikolay, Skitchenko Rostislav, Barbitoff Yury, Kardymon Olga, Skoblov Mikhail
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom) DOI
• • 2023 Polyribosomes of circular topology are prevalent in mammalian cells
  • Baymukhametov TN, Lyabin DN, Chesnokov YM, Sorokin II, Pechnikova EV, Vasiliev AL, Afonina ZA
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom), том 51, № 2, с. 908-918 DOI
• • 2023 Red light-emitting short Mango-based system enables tracking a mycobacterial small noncoding RNA in infected macrophages
  • Bychenko Oksana S., Khrulev Alexei A., Svetlova Julia I., Tsvetkov Vladimir B., Kamzeeva Polina N., Skvortsova Yulia V., Tupertsev Boris S., Ivanov Igor A., Aseev Leonid V., Khodarovich Yuriy M., Belyaev Evgeny S., Kozlovskaya Liubov I., Zatsepin Timofei S., Azhikina Tatyana L., Varizhuk Anna M., Aralov Andrey V.
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom) DOI
• • 2023 Tissue-specific regulation of gene expression via unproductive splicing
  • Mironov Alexei, Petrova Marina, Margasyuk Sergey, Vlasenok Maria, Mironov Andrey A., Skvortsov Dmitry, Pervouchine Dmitri D.
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom) DOI
• • 2022 7,8-Dihydro-8-oxo-1,N6-ethenoadenine: an exclusively Hoogsteen-paired thymine mimic in DNA that induces A→T transversions in Escherichia coli
  • Aralov Andrey V., Gubina Nina, Cabrero Cristina, Tsvetkov Vladimir B., Turaev Anton V., Fedeles Bogdan I., Croy Robert G., Isaakova Ekaterina A., Melnik Denis, Dukova Svetlana, Ryazantsev Dmitriy Y., Khrulev Alexei A., Varizhuk Anna M., González Carlos, Zatsepin Timofei S., Essigmann John M.
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom) DOI
• • 2022 A mitochondria-specific mutational signature of aging: increased rate of A > G substitutions on the heavy strand
  • Mikhailova Alina G., Mikhailova Alina A., Ushakova Kristina, Tretiakov Evgeny O., Iliushchenko Dmitrii, Shamansky Victor, Lobanova Valeria, Kozenkov Ivan, Efimenko Bogdan, Yurchenko Andrey A., Kozenkova Elena, Zdobnov Evgeny M., Makeev Vsevolod, Yurov Valerian, Tanaka Masashi, Gostimskaya Irina, Fleischmann Zoe, Annis Sofia, Franco Melissa, Wasko Kevin, Denisov Stepan, Kunz Wolfram S., Knorre Dmitry, Mazunin Ilya, Nikolaev Sergey, Fellay Jacques, Reymond Alexandre, Khrapko Konstantin, Gunbin Konstantin, Popadin Konstantin
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom), с. 1-14 DOI
• • 2022 ANANASTRA: annotation and enrichment analysis of allele-specific transcription factor binding at SNPs
  • Boytsov Alexandr, Abramov Sergey, Aiusheeva Ariuna Z., Kasianova Alexandra M., Baulin Eugene, Kuznetsov Ivan A., Aulchenko Yurii S., Kolmykov Semyon, Yevshin Ivan, Kolpakov Fedor, Vorontsov Ilya E., Makeev Vsevolod J., Kulakovskiy Ivan V.
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom), том 50, № W1, с. W51-W56 DOI
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  • 2022 Comparison of genome architecture at two stages of male germline cell differentiation in Drosophila
  • Ilyin Artem A., Kononkova Anna D., Golova Anastasia V., Shloma Viktor V., Olenkina Oxana M., Nenasheva Valentina V., Abramov Yuri A., Kotov Alexei A., Maksimov Daniil A., Laktionov Petr P., Pindyurin Alexey V., Galitsyna Aleksandra A., Ulianov Sergey V., Khrameeva Ekaterina E., Gelfand Mikhail S., Belyakin Stepan N., Razin Sergey V., Shevelyov Yuri Y.
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom), том 50, № 6, с. 3203-3225 DOI
• • 2022 Efficient target cleavage by Type V Cas12a effectors programmed with split CRISPR RNA
  • Shebanova Regina, Nikitchina Natalia, Shebanov Nikita, Mekler Vladimir, Kuznedelov Konstantin, Ulashchik Egor, Vasilev Ruslan, Sharko Olga, Shmanai Vadim, Tarassov Ivan, Severinov Konstantin, Entelis Nina, Mazunin Ilya
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom), том 50, № 2, с. 1162-1173 DOI
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  • 2022 GNAT toxins evolve toward narrow tRNA target specificities
  • Bikmetov Dmitry, Hall Alexander M.J., Livenskyi Alexei, Gollan Bridget, Ovchinnikov Stepan, Gilep Konstantin, Kim Jenny Y., Larrouy-Maumus Gerald, Zgoda Viktor, Borukhov Sergei, Severinov Konstantin, Helaine Sophie, Dubiley Svetlana
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom) DOI
• • 2022 Insights into the molecular mechanism of translation inhibition by the ribosome-targeting antibiotic thermorubin
  • Paranjpe Madhura N., Marina Valeria I., Grachev Aleksandr A., Maviza Tinashe P., Tolicheva Olga A., Paleskava Alena, Osterman Ilya A., Sergiev Petr V., Konevega Andrey L., Polikanov Yury S., Gagnon Matthieu G.
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom) DOI
• • 2022 Noncanonical prokaryotic X family DNA polymerases lack polymerase activity and act as exonucleases
  • Prostova Maria, Shilkin Evgeniy, Kulikova Alexandra A., Makarova Alena, Ryazansky Sergei, Kulbachinskiy Andrey
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom), том 50, № 11, с. 6398-6413 DOI
• • 2022 OrthoQuantum: visualizing evolutionary repertoire of eukaryotic proteins
  • Ilnitskiy Ivan S., Zharikova Anastasia A., Mironov Andrey A.
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom), том 2022, с. gkac385-gkac385 DOI
• • 2022 RNA polymerase pausing, stalling and bypass during transcription of damaged DNA: from molecular basis to functional consequences
  • Agapov Aleksei, Olina Anna, Kulbachinskiy Andrey
  • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom), том 50, № 6, с. 3018-3041 DOI