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An Experimental Tool to Estimate the Probability of a Nucleotide Presence in the Crystal Structures of the Nucleotide–Protein Complexesстатья
Информация о цитировании статьи получена из
Web of Science,
Scopus
Статья опубликована в журнале из списка Web of Science и/или Scopus
Дата последнего поиска статьи во внешних источниках: 28 февраля 2018 г.
- Авторы: Nemchinova Maria, Balobanov Vitaly, Nikonova Ekaterina, Lekontseva Natalia, Mikhaylina Alisa, Tishchenko Svetlana, Nikulin Alexey
- Журнал: Protein Journal
- Том: 36
- Номер: 3
- Год издания: 2017
- Издательство: Springer Verlag
- Местоположение издательства: Germany
- Первая страница: 157
- Последняя страница: 165
- DOI: 10.1007/s10930-017-9709-y
- Аннотация: A correlation between the ligand-protein affinity and the identification of the ligand in the experimental electron density maps obtained by X-ray crystallography has been tested for a number of RNA-binding proteins. Bacterial translation regulators ProQ, TRAP, Rop, and Hfq together with their archaeal homologues SmAP have been used. The equilibrium dissociation constants for the N-methyl-anthraniloyl-labelled adenosine and guanosine monophosphates titrated by the proteins have been determined by the fluorescent anisotropy measurements. The estimated stability of the nucleotide-protein complexes has been matched with a presence of the nucleotides in the structures of the proposed nucleotide-protein complexes. It has been shown that the ribonucleotides can be definitely identified in the experimental electron density maps at equilibrium dissociation constant <10 μM. At KD of 20-40 μM, long incubation of the protein crystals in the nucleotide solution is required to obtain the structures of the complexes. The complexes with KD value higher than 50 μM are not stable enough to survive in crystallization conditions.
- Добавил в систему: Леконцева Наталья Владимировна